Package: monoClust 1.2.1

monoClust: Perform Monothetic Clustering with Extensions to Circular Data

Implementation of the Monothetic Clustering algorithm (Chavent, 1998 <doi:10.1016/S0167-8655(98)00087-7>) on continuous data sets. A lot of extensions are included in the package, including applying Monothetic clustering on data sets with circular variables, visualizations with the results, and permutation and cross-validation based tests to support the decision on the number of clusters.

Authors:Tan Tran [aut, cre], Brian McGuire [aut], Mark Greenwood [aut]

monoClust_1.2.1.tar.gz
monoClust_1.2.1.zip(r-4.7-any)monoClust_1.2.1.zip(r-4.6-any)monoClust_1.2.1.zip(r-4.5-any)
monoClust_1.2.1.tgz(r-4.6-any)monoClust_1.2.1.tgz(r-4.5-any)
monoClust_1.2.1.tar.gz(r-4.7-any)monoClust_1.2.1.tar.gz(r-4.6-any)
monoClust_1.2.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
monoClust/json (API)

# Install 'monoClust' in R:

install.packages('monoClust', repos = c('https://vinhtantran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/vinhtantran/monoclust/issues

Pkgdown/docs site:https://vinhtantran.github.io

Datasets:

wind_sensit_2007 - Existence of Microorganisms Carried in Wind
wind_sensit_2008 - Existence of Microorganisms Carried in Wind

On CRAN:

circular-variables clusters ggplot2 monothetic plot visualization

4.18 score 1 stars 1 packages 10 scripts 322 downloads 16 exports 35 dependencies

Last updated from:5af33230c1. Checks:7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	NOTE	149
source / vignettes	OK	207
linux-release-x86_64	NOTE	159
macos-release-arm64	NOTE	161
macos-oldrel-arm64	NOTE	186
windows-devel	NOTE	136
windows-release	NOTE	113
windows-oldrel	NOTE	99
wasm-release	OK	164

Exports:%cd-%%cd+%%cr-%%cr+%as_MonoClust circ_dist cv.test ggcv ggpcp inertia_calc is_MonoClust medoid MonoClust perm.test todeg torad

Dependencies:cli cluster codetools cpp11 doParallel dplyr farver foreach generics ggplot2 glue gtable isoband iterators labeling lifecycle magrittr permute pillar pkgconfig purrr R6 RColorBrewer rlang S7 scales stringi stringr tibble tidyr tidyselect utf8 vctrs viridisLite withr

Monothetic Clustering 'monoClust' Package

Rendered frommonoclust.Rmdusingknitr::rmarkdown

Last update: 2020-11-30
Started: 2020-10-15

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Coerce Similar Object to MonoClust	as_MonoClust as_MonoClust.default
Add/Subtract Circular Values in Degrees/Radian	%cd+% %cd-% %cr+% %cr-% circ_arith
Distance Matrix of Circular Variables	circ_dist
Cross-Validation Test on MonoClust	cv.test
GGPlot the Mean Square Error with Error Bar for +/- 1 Standard Error	ggcv
Parallel Coordinates Plot with Circular Variables	ggpcp
Cluster Inertia Calculation	inertia_calc
Test If The Object is A MonoClust	is_MonoClust
Find Medoid of the Cluster	medoid
Monothetic Clustering	MonoClust
Monothetic Clustering Tree Object	MonoClust.object
Permutation Test on Monothetic Tree	perm.test
Plot the Mean Square Error with Error Bar for +/- 1 Standard Error	plot.cv.MonoClust
Plot MonoClust Splitting Rule Tree	plot.MonoClust
Predictions from a MonoClust Object	predict.MonoClust
Print MonoClust Cross-Validation Result	print.cv.MonoClust
Print Monothetic Clustering Results	print.MonoClust
Transform Between Degree and Radian	todeg torad to_deg_rad
Existence of Microorganisms Carried in Wind	wind_sensit_2007
Existence of Microorganisms Carried in Wind	wind_sensit_2008